A Science Gateway for Atomic and Molecular Physics
Armin Scrinzi, Barry Schneider, Fernando Martin, Igor Bray, Jimena Garfinkiel, Jonathan Tennyson, Klaus Bartschat, Markus Klinker, Oleg Zatsarinny, Sudhakar Pamidighantam
Advanced Research Computing Containers for AI Workloads
Kyle J. Smathers, Mark E. DeYoung, Marvin W. Newlin
Automatic Modulefile Generation in Environment Modules and Lmod Systems with mkmod
Kent F. Milfeld
Building A Scalable Forward Flux Sampling Framework using Big Data and HPC
Amy W. Apon, Jon Kilganon, Linh B. Ngo, Ryan S. DeFever, Sapna Sarupria, Walter Hanger
Combining OpenCL and MPI to Support Heterogeneous Computing on a Cluster
John Hale, Ming Li, Peter Hawrylak
Community Collections: A Framework for Openly Sharing Software Stacks Across Research Computing Centers Using Singularity and Lmod
Kevin Manalo, Levi Baber, Nuyun Zhang, Ryan Bradley, Zhi-Qiang You
Connecting Diffusion MRI to Skeletal Muscle Microstructure: Leveraging Meta-Models and GPU-acceleration
John G. Georgiadis, Noel M. Naughton
Enabling Real-time User Interaction For Decision Support: Experiences Extending A Local Agave Platform Metadata Service
Gwen A. Jacobs, Jared McLean, Kolja Rotzoll, Scot K. Izuka, Sean B. Cleveland
Expanding the Computational Anatomy Gateway from clinical imaging to basic neuroscience research
Anthony Kolasny, Daniel J. Tward, Fatima Kahn, Juan Troncoso, Michael I. Miller
Exploring Untrusted Distributed Storage for
High Performance Computing
Austin Smith, Justin Riley, Milan Kupcevic, Muneeba Syed, Paul Edmon, Scott Yockel
Extensible Framework for Analysis of Farm Practices and Programs
Christopher M. Navarro, Gary D. Schnitkey, Gowtham Naraharisetty, Hanseok Jeong, Jonathan Coppess, Jong S. Lee, Lisa Gatzke, Michal Ondrejcek, Rabin Bhattarai, Rishabh Gupta, Sandeep Puthanveetil Satheesan, Shannon Bradley, Yan Zhao
GenApp, Containers and Abaco
Emre H. Brookes, Joe Stubbs
Greyfish: An Out-of-the-Box, Reusable, Portable Cloud Storage Service
Carlos Redondo, Ritu Arora
HUBzero®: Novel Concepts Applied to Established Computing Infrastructures to Address Communities’ Needs
Ben Haley, Claire Stirm, Michael Zentner, Sandra Gesing, Steve Clark
Implementing a Flexible, Fault Tolerant Job Management System for Science Gateways
Ajinkya Dhamnaskar, Dimuthu Wannipurage, Eroma Abeysinghe, Gourav Shenoy, Lahiru Jayathilaka, Marcus Christie, Marlon Pierce, Sudhakar Pamidighantam, Suresh Marru
In-situ Analysis and Visualization of Earthquake Simulation
Dawei Mu, Hui Zhou, Jon Moran, Mahidhar Tatineni, Ronald Hawkins, Steve Campbell, Yifeng Cui
Integrity Protection for Scientific Workflow Data: Motivation and Initial Experiences
Anirban Mandal, Ewa Deelman, F. Alex Feltus, Ilya Baldin, Karan Vahi, Mats Rynge, Omkar Bhide, Randy Heiland, Raquel Hill, Von Welch, William L. Poehlman
Introducing the Open Science Chain — Protecting Integrity and Provenance of Research Data
Subhashini Sivagnanam, Viswanath Nandigam
Leveraging Elasticsearch to Improve Data Discoverability in Science Gateways
Jake Rosenberg, Joseph Meiring, Josue B. Coronel, Sarah Gray, Tracy Brown
openDIEL: A Parallel Workflow Engine and Data Analytics Framework
Daniel Nichols, Efosa Asemota, Frank H. Betancourt, Kwai Wong, Quindell Marshall, Stan Tomov
Reproducible Hydrological Modeling with CyberGIS-Jupyter: A Case Study on SUMMA
Anand Padmanabhan, Anthony Castronova, Dandong Yin, David Tarboton, Fangzheng Lu, Jon Goodall, Shaowen Wang, Young Don Choi
Scalable Parallel Programming in Python with Parsl
Anna Woodard, Daniel S. Katz, Ian Foster, Kyle Chard, Michael Wilde, Yadu N. Babuji, Zhuozhao lI
Shuffler: A Large Scale Data Management Tool for Machine Learning in Computer Vision
Evgeny Toropov, José Moura, Paola A. Buitrago
Singularity: simple, secure containers for computer-driven workloads
David C. Godlove
The PreSync Project: Synchronization Automation in the Cactus Framework
Roland Haas, Samuel D. Cupp, Steven R. Brandt
Web of Trust Tool for Gateway User Vetting
Amitava Majumdar, Kenneth K. Yoshimoto, Mark A. Miller, Nicholas T. Carnevale, Subhashini Sivagnanam
Web-based Visualization and Querying of Food and Beverage Endorsements by Celebrities
Faiz Abidi, Srijith Rajamohan
A Continuous Integration-Based Framework for Software Management
Eric Franz, Heechang Na, Judith Gardiner, Karen Tomko, Samuel Khuvis, Scott Brozell, Trey Dockendorf, Zhi-Qiang You
A Multi-Environment HPC-Scale Puppet Infrastructure for Compliance and Systems Automation
Edward Munsell, Evan F. Bollig, Jeffrey McDonald, Michael Baynton, Nicholas Bertrand, Raychel M. Benson
A Resource Utilization Analytics Platform Using Grafana and Telegraffor the Savio Supercluster
Nicolas A. Chan
Arbiter: Dynamically Limiting Resource Consumption on Login Nodes
Brian Haymore, Dylan Gardner, Robben Migacz
Assessment of Return on Investment and impact of cyberinfrastructure facilities: a survey of current methods
Alan Sill, Amy Apon, Craig Stewart, David Lifka, David Y. Hancock, Nicholas Berente, Robert Henschel, Thomas Furlani
Deploying a Top-100 Supercomputer for Large Parallel Workloads: the Niagara Supercomputer
Alexey Fedoseev, Bruno Mundim, Ching-Hsing Yu, Daniel Gruner, Erik Spence, Fatih Ertinaz, Fei Mao, Jaime Pinto, Joseph Chen, Leslie Groer, Marcelo Ponce, Marco Saldarriaga, Michael Nolta, Ramses Van Zon, Richard W. Peltier, Scott Northrup, Vladimir Slavnic
Developing and Operating Edge Services on Federated Infrastructure Using MiniSLATE
Benjamin Kulbertis, Christopher K. Weaver, Joe Breen, Robert Gardner, Shawn McKee
Expressing and Managing Network Policies for Emerging HPC Systems
James Griffioen, Jane Hayes
Good Enough Project Management Practices for Researcher Support Projects
Christina Maimone
Harmony: A Harness Monitoring System for the Oak Ridge Leadership Computing Facility
Cameron Kuchta, Reuben Budiardja, Verónica G. Vergara Larrea
IceCube’s Long Term Archive Software
Benedikt Riedel, David Schultz, Patrick Meade
Making it More Secure: The Technical and Social Challenges of Expanding the Functionality of an Existing HPC Cluster to Meet University and Federal Data Security Requirements
Christopher Doane, Gary Jung, Jason Christopher, Sergio A. Rivera, Zongming Fei
Managing a Heterogeneous Cluster
Adam Tygart, Dan Andresen, Dave Turner, Kyle Hutson
Managing Privilege and Access on Federated Edge Platforms
Christopher N. Weaver, Joe Breen, Robert Gardner, Shawn McKee
Mii: An Automated Search Engine for Environment Modules
Justin Stanley
ORCID Integration Into Science Gateways
Carrie Arnold, Dave Hart, Ester Soriano, Maytal Dahan
Performant Container Support for HPC Applications
Lei Huang, R. Todd Evans, Yinzhi Wang
Petrel: A Programmatically Accessible Research Data Service
Ben Blaiszik, Benjamin S. Allen, Ian Foster, Kyle Chard, Lukasz Lacinski, Michael Papka, Rachana Ananthakrishnan, Rick Wagner, Ryan Chard, William E. Allcock
Providing a Unified Software Environment for Canada’s National Advanced Computing Centers
Bart Oldeman, Maxime Boissonneault, Ryan P. Taylor
Provisioning ZFS Pools On Lustre
Adam Howard, Rick Mohr
PULSAR:Deploying Network Monitoring and Intrusion Detection for the Science DMZ
Brian Werts, Callum Gundlach, Erik Gough, Jacob Sharp, Lauren Featherstun, Lev Gorenstein, Lipu Wu, Nathan DeMien, Sagar Narayan, Shivam Trivedi, Xiao Zhu
Research Computing Desktops: Demystifying research computing for non-Linux users
Abhinav Thota, Alexander Younts, Ben Fulton, Christopher Phillips, Daniel T. Dietz, H.E. Cicada B. Dennis, Laura Huber, Le Mai Weakley, Scott Michael, Stephen L. Harrell, Winona Snapp-Childs, Xiao Zhu
Serverless Science Gateway Development for Ca2+ binding site prediction on Amazon Web Services: Case Study
Melchizedek G. Mashiku, Neranjan S. Edirisinghe
StashCache: A Distributed Caching Federation for the Open Science Grid
Brian Bockelman, Brian Lin, Derek Weitzel, Edgar Fajardo Hernandez, Ilija Vukotic, Marian Zvada, Mats Rynge, Matyas Selmeci, Rob Gardner
The biggest failure of my career: what happened, what we did about it, and how we won’t do it again
Jonathon Anderson
Trusted CI Experiences in Cybecurity and Service to Open Science
Andrew Adams, Barton P. Miller, Craig Jackson, Dana Brunson, Elisa Heymann, Florence Hudson, Jeannette Dopheide, Jim Basney, Jim Marsteller, John Zage, Kay Avila, Mark Krenz, Robert Cowles, Ryan Kiser, Scott Russell, Sean Peisert, Susan Sons, Terry Fleury, Von Welch
Wrangling Rogues: A Case Study on Managing Experimental Post-Moore Architectures
Jason Riedy, Jeffrey S. Young, Thomas M. Conte, Will Powell
A Framework for Identifying Designs from Incomplete, Fragmented Cultural Heritage Objects using Curve Patterns
Ben Torkian, Colin Wilder, Jun Zhou, Karen Smith, Paul Sagona, Song Wang, Yuhang Lu
A Novel Pruning Method for Convolutional Neural Networks Based off Identifying Critical Filters
Mihaela Dimovska, Travis Johnston
Automated Deep Learning Analysis of Purple Martin Videos Depicting Incubation and Provisioning
Heather M. Williams, L. Shawn Matott, Robert L. DeLeon
Characterizing the Execution of Deep Neural Networks on Collaborative Robots and Edge Devices
Abhijeet Saraha, Arthur Siqueira, Bingyao Wang, Chunjun Jia, Dongsuk Lim, Hyesoon Kim, Jiashen Cao, Lixing Liu, Matthew L. Merck, Qiusen Huang, Ramyad Hadidi
Developing a Meta Framework for Key-Value Memory Networks on HPC Clusters
Arghya K. Das, Choonhan Youn, Joohyun Kim, Seungwon Yang
Extracting Domain Information using Deep Learning
Amit Gupta, Crispin Taylor, Jennifer Regala, Pankaj Jaiswal, Weijia Xu
Facial Expression Recognition: Utilizing Digital Image Processing, Deep Learning, and High-Performance Computing
Francisco Reveriano
Improving HPC System Performance by Predicting Job Resources via Supervised Machine Learning
Adedolapo Okanlawon, Brandon Dunn, Dan Andresen, Mohammed Tanash, William Hsu, Yang Huichen
In and out of the nucleus – CNN-based segmentation of cell nuclei from images of a translocating biosensor
Jeremy E. Purvis, Katarzyna M. Kedziora, Michael R. Kosorok, Tarek M. Zikry
MagmaDNN: Accelerated Deep Learning Using MAGMA
Alex Gessinger, Daniel L. Nichols, Kwai Wong, Lucien Ng, Sihan Chen, Stanimire Tomov
Open Compass: Accelerating the Adoption of AI in Open Research
Nicholas A. Nystrom, Paola A. Buitrago
Publishing and Serving Machine Learning Models with DLHub
Anna Woodard, Ben Blaiszik, Ian Foster, Kyle Chard, Logan Ward, Ryan Chard, Steven Tuecke, Yadu Babuji, Zhuozhao lI
Towards a Framework for Validating Machine Learning Results in Medical Imaging
Frank M. Skidmore, Murat M. Tanik, Thomas Anthony, William S. Monroe
Traps, Pitfalls and Misconceptions of Machine Learning applied to Scientific Disciplines
Alessandro Fanfarillo, Davide Del Vento
VAStream: A Visual Analytics System for Fast Data Streams
Raju Gottumukkala, Satya Katragadda, Siva Venna
An Expansion of the User Support Services for the Research Computing Group at the University of Colorado Boulder
Aaron Holt, Andrew J. Monaghan, Daniel Trahan, Joel Frahm, Patrick Burns, Shelley L. Knuth, Thomas Hauser, Timothy Dunn, Zebula Sampedro
Campus Champions: Building and sustaining a thriving community of practice around research computing and data
Aaron Culich, Dana Brunson, Douglas Jennewein, Henry Neeman, Jack Smith, Julie Wernert, Lizanne DeStefano, Lorna Rivera, Marisa Brazil, Tiffany Jolley, Timothy Middelkoop
Cultivating the Cyberinfrastructure Workforce via an Intermediate/Advanced Virtual Residency Workshop
Christopher S. Simmons, Dana Brunson, Daniel Voss, Dirk Colbry, Henry Neeman, Hussein M. Al-Azzawi, James W. Ferguson, Jason Wells, Jason L. Simms, Jeff T. Falgout, Joshua Gyllinsky, Mohammed Tanash, Sandra Gesing, Scott Yockel, William Burke
Cyber Infrastructure: Training and Mentoring – A way to engage students in their technology future
D. Brian Ormand, Diana V. Dugas
DeapSECURE: Empowering Students for Data- and Compute-Intensive Research in Cybersecurity through Training
Hongyi Wu, Karina Arcaute, Masha Sosonkina, Wirawan Purwanto
Holistic Summer Undergraduate Research Program in High PerformanceComputing Research
Jung-Han Kimn, Stephen P. Gent, Tyler M. Miller
Integrating scientific programming in communities of practice for students in life science
Alexa M. Salsbury, Anne M. Brown, Justin A. Lemkul
Mining Online Training Log Data
Christopher R. Myers, Jennifer Houchins, Lorna Rivera, Susan Mehringer
The Blue Waters Petascale Institute: Longitudinal Impact and Assessment-Driven Development of an Intensive, Hands-on Curriculum for Teaching Applications in HPC
Aaron Weeden, Cameron Foss, Colleen Heinemann, Jennifer Houchins, Mobeen Ludin, Skylar Thompson
The CyberAmbassador Training Program
Astri Briliyanti, Dirk J. Colbry, Julie Wilson Rojewski, Kathleen Colbry, TJ Nguyen
The Professionalization of Cyberinfrastructure Personnel?
Dana Brunson, Henry Neeman, James Bottum, James Howison, Joel Cutcher-Gershenfeld, John Towns, John L. King, Nancy Wilkins-Diehr, Nicholas Berente, Stanley Ahalt, Susan Winter
Undergraduate Data Science and Diversity at Purdue University
Alex Younts, Elizabett Hillery, Eric Adams, Jenna Rickus, Mark D. Ward, Preston Smith